Targeted sequencing of Aspalathus calcarea - SRA

SRX22465677: Targeted sequencing of Aspalathus calcarea
1 ILLUMINA (Illumina HiSeq 3000) run: 396,039 spots, 118.8M bases, 45.9Mb downloads

Design: Target capture using the "NitFix" panel of 100 loci

Submitted by: Mississippi State University

Study: Targeted sequencing in the Nitrogen-Fixing Clade Part 2

PRJNA1021608 • SRP471051 • All experiments • All runs

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Raw sequencing reads from herbarium specimens collected for the study "Shifts in evolutionary lability underlie independent gains and losses of root-nodule symbiosis in a single clade of plants." The method of data collection has been reported extensively in Folk et al. 2021: https://doi.org/10.1002/aps3.11410. Methods related to sequence assembly can be found in Kates et al. 2021 https://doi.org/10.3389/fpls.2021.669064.

Sample: Targeted sequencing of Aspalathus calcarea

SAMN37564556 • SRS19479494 • All experiments • All runs

Organism: Aspalathus calcarea

Library:

Name: 12d18aef-45c4-4233-9ef8-a20efc099f53

Instrument: Illumina HiSeq 3000

Strategy: Targeted-Capture

Source: GENOMIC

Selection: Hybrid Selection

Layout: PAIRED

Runs: 1 run, 396,039 spots, 118.8M bases, 45.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR26766888	396,039	118.8M	45.9Mb	2023-11-09

ID:: 30451466

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